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Winding DNA by molecular reel

A novel method of manipulating DNA’s curvature

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Graduate School of Engineering / Faculty of Engineering
2012/08/02

DNA, a long string-like polymer encoding the genetic information of life, is packaged in cells very compactly. Keeping DNA in compact, tightly bent conformation in the cell is important for storage of genetic information and regulation of gene expression. However, the force and energy required for bending DNA tightly with curvature radii of a few nanometers have not been measured directly, only estimated from the relaxed conformation of DNA.

Experimental setup for winding DNA by molecular reel © Huijuan You

Prof. Hiroyuki Noji’s group at the Department of Applied Chemistry in the University of Tokyo’s Graduate School of Engineering has developed a method to address this issue. By using the F1-ATPase rotary motor protein and single-molecule manipulation techniques, the researchers were able to wind a single DNA molecule into a loop with diameter of 8.5 to 20 nm and directly measure the force required to bend DNA tightly.

This finding by Prof. Noji’s group contributes to restrict the models of DNA-protein interaction in terms of the elastic energy of DNA. This novel approach will also be a useful tool to reveal the mechanism of gene regulation in the cell and contribute to the designing of future DNA-based nano-structures.

Press release

Paper

Huijuan You, Ryota Iino, Rikiya Watanabe, Hiroyuki Noji,
“Winding single-molecule double-stranded DNA on a nanometer-sized reel”,
Nucleic Acids Research Online Edition: 2012/07/05 (Japan time), doi: 10.1093/nar/gks65.
Article link

Links

Graduate School of Engineering

Department of Applied Chemistry

Noji Laboratory (Japanese)

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